Personalized Metabolic Analysis of Diseases
IEEE-ACM Transactions on Computational Biology and Bioinformatics, Mayıs 2021, ISSN: 1545-5963
ÇAKMAK ALİ,ÇELİK MUHAMMED HASAN
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Computational interpretation of metabolomics measurements
Proceedings of the 2nd ACM Conference on Bioinformatics, Computational Biology and Biomedicine - BCB ’xx11, 1 Ağustos 2011
ÇAKMAK ALİ,QI XINJIAN,ÇİÇEK ABDULLAH ERCÜMENT,ÖZSOYOĞLU GÜLTEKİN
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Computational analysis of TP53 vs. CTNNB1 mutations in hepatocellular carcinoma suggests distinct cancer subtypes with differential gene expression profiles and chromatin states
COMPUTATIONAL BIOLOGY AND CHEMISTRY, Vol. 89, No. -, Ekim 2020, s. 107404-107404, ISSN: 1476-9271
BİTERGE SÜT BURCU
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Application of Dempster-Schafer Method in Family-Based Association Studies
IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 10, No. 4, Temmuz 2013, s. 1071-1075, ISSN: 1545-5963
RAJABLI FARID, GÖKTAŞ ÜNAL, İNAN GÜL
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Tuning Hyperparameters of Machine Learning Algorithms and Deep Neural Networks Using Metaheuristics: A Bioinformatics Study on Biomedical and Biological Cases
Computational Biology and Chemistry, Vol. 97, Nisan 2022, ISSN: 1476-9271
NEMATZADEH MIANDOAB SAJJAD, KIANI FARZAD, TORKAMANIAN AFSHAR MAHSA, AYDIN NİZAMETTİN
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Markovian encoding models in human splice site recognition using SVM
COMPUTATIONAL BIOLOGY AND CHEMISTRY, Vol. 73, No. 4, Nisan 2018, s. 159-170, ISSN: 1476-9271
PASHAEI ELHAM,AYDIN NİZAMETTİN
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A novel computational remodelling algorithm for the probabilistic evolution of collagen fibre dispersion in biaxially strained vascular tissue
Mathematical Medicine and Biology, Vol. 34, No. 4, Aralık 2017, s. 433-467, ISSN: 1477-8599
ÇOBAN GÜRSAN,ÇELEBİ MUSTAFA SERDAR
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Efficient query evaluation for DAG shaped hierarchies
Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology - BCB ’xx10, 2 Ağustos 2010
CHENG EN,ÇAKMAK ALİ,ÖZSOYOĞLU ZEHRA MERAL
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Analyzing metabolite measurements for automated prediction of underlying biological mechanisms
Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology - BCB ’xx10, 2 Ağustos 2010
ÇAKMAK ALİ,DSOUZA ARUN,HANSON RİCHARD,ÖZSOYOĞLU GÜLTEKİN
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PathCase MAW An Online Metabolic Network Analysis Workbench
Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics - BCB’xx13, 22 Eylül 2013
ÇİÇEK ABDULLAH ERCÜMENT,QI XINJIAN,ÇAKMAK ALİ,STEPHEN JOHNSON,HAN XU,ALSHALWİ SAMI,ÖZSOYOĞLU ZEHRA MERAL,ÖZSOYOĞLU GÜLTEKİN
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Exploring the Conformational Transitions of Biomolecular Systems Using a Simple Two-State Anisotropic Network Model
PLoS Computational Biology, Vol. 10, No. 4, Nisan 2014, s. 1003521, ISSN: 1553-7358
DAS AVİSEK, GÜR MERT, CHENG MARY HONGYİNG, JO SUNHWAN, BAHAR İVET, ROUX BENOİT
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Scalable classification of organisms into a taxonomy using hierarchical supervised learners
JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, Vol. 18, No. 5, Ekim 2020, ISSN: 0219-7200
SOHSAH GİHAD N.,IBRAHİMZADA ALİ REZA,AYAZ HUZEYFE,ÇAKMAK ALİ
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QUERYING METABOLISM UNDER DIFFERENT PHYSIOLOGICAL CONSTRAINTS
Journal of Bioinformatics and Computational Biology, Vol. 8, No. 02, Nisan 2010, s. 247-293, ISSN: 0219-7200
ÇAKMAK ALİ,ÖZSOYOĞLU GÜLTEKİN,HANSON RİCHARD
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A NEW METABOLOMICS ANALYSIS TECHNIQUE STEADY STATE METABOLIC NETWORK DYNAMICS ANALYSIS
Journal of Bioinformatics and Computational Biology, Vol. 10, No. 01, Şubat 2012, s. 1240003-1240039, ISSN: 0219-7200
ÇAKMAK ALİ,QI XINJIAN,ÇİÇEK ABDULLAH ERCÜMENT,BEDERMAN ILYA,HENDERSON LEIGH,DRUMM MITCHELL,ÖZSOYOĞLU GÜLTEKİN
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